SOM cluster: 625

Cluster Hypersensitivity Profile


Genomic Location Trend

These plots show the distribution of the DHS sites surrounding the Transcript Start Site of the nearest gene.

Stats

Number of sites: 779
Promoter: 2%
CpG-Island: 0%
Conserved: 20%

Enriched Motifs & Matches

Match Detail: [Jaspar]
Sites: 19/100 | e-val: 0.0011
Factore-val(match)DB
HNF1A0.000040498JASPAR
ARID3A0.000088288JASPAR
Lhx30.00010688JASPAR
HNF1B0.00013328JASPAR
Sox20.00021347JASPAR
Sites: 33/100 | e-val: 0.00015
Factore-val(match)DB
NFIL30.0000054385JASPAR
CEBPA0.0000084188JASPAR
HLF0.000034196JASPAR
T0.0012429JASPAR
znf1430.0037776JASPAR

BED file downloads

Download top of 779 regions.

Top 10 Example Regions

LocationGene LinkDist.
chr9: 110751500-110751650RP11-240E2.231.3
chr19: 35927285-35927435KRTDAP51.18
chrX: 10136400-10136550RP6-1O2.151.27
chr4: 74740200-74740350CXCL652.25
chr1: 234755840-234755990RP4-781K5.752.74
chr1: 234755840-234755990IRF2BP252.74
chr13: 48980120-48980270LPAR655.32
chrX: 142720940-142721090SLITRK456.03
chrX: 114733600-114733750RP5-878I13.157.51
chr9: 117583160-117583310TNFSF1558.03
View top connections.

Other

CodePlot