SOM cluster: 2388

Cluster Hypersensitivity Profile


Genomic Location Trend

These plots show the distribution of the DHS sites surrounding the Transcript Start Site of the nearest gene.

Stats

Number of sites: 238
Promoter: 2%
CpG-Island: 0%
Conserved: 30%

Enriched Motifs & Matches

Match Detail: [Jaspar]
Sites: 19/100 | e-val: 0.0000069
Factore-val(match)DB
SRY0.00010297JASPAR
SOX100.00013818JASPAR
Sox50.00041962JASPAR
SOX90.0015294JASPAR
Foxd30.0023368JASPAR

BED file downloads

Download top of 238 regions.

Top 10 Example Regions

LocationGene LinkDist.
chr8: 69765920-69766070RP11-865I6.240.38
chr3: 165570640-165570790BCHE62.85
chr6: 6771840-6771990RP1-80N2.264.67
chr3: 161131320-161131470SPTSSB69.3
chr3: 161131320-161131470EEF1GP469.3
chr17: 59389825-59389975TBX269.86
chr17: 59389825-59389975BCAS369.86
chr4: 89580440-89580590HERC372.71
chr12: 79439380-79439530RP11-390N6.175.27
chr8: 125792740-125792890RP11-1082L8.375.38
View top connections.

Other

CodePlot