SOM cluster: 1863

Cluster Hypersensitivity Profile


Genomic Location Trend

These plots show the distribution of the DHS sites surrounding the Transcript Start Site of the nearest gene.

Stats

Number of sites: 1199
Promoter: 2%
CpG-Island: 0%
Conserved: 60%

Enriched Motifs & Matches

Match Detail: [Jaspar]
Sites: 74/100 | e-val: 0
Factore-val(match)DB
SOX100.0000059389JASPAR
SOX90.0036841JASPAR
RXRA::VDR0.012371JASPAR
Sox170.030926JASPAR
Sox20.053357JASPAR
Sites: 35/100 | e-val: 0.1
Factore-val(match)DB
Lhx30.00011907JASPAR
Foxd30.00043625JASPAR
Foxq10.00061115JASPAR
HNF1A0.0012108JASPAR
SOX100.0027949JASPAR

BED file downloads

Download top of 1199 regions.

Top 10 Example Regions

LocationGene LinkDist.
chr1: 151378825-151378975PI4KB30.98
chr8: 81420805-81420955RP11-48B3.344.88
chr1: 153901645-153901795GATAD2B48.05
chr2: 55365880-55366030AC012358.451.67
chr19: 34371025-34371175KCTD1555.88
chr12: 132222865-132223015MMP1756.45
chr22: 38381945-38382095SOX1057.69
chr16: 4723785-4723935C16orf9657.91
chr16: 4723785-4723935MGRN157.91
chr6: 10538125-10538275RP11-360O19.461.58
View top connections.

Other

CodePlot